From: "René Scharfe" <rene.scharfe@lsrfire.ath.cx>
To: Junio C Hamano <gitster@pobox.com>
Cc: git@vger.kernel.org
Subject: [PATCH] import memmem() with linear complexity from Gnulib
Date: Sat, 28 Feb 2009 20:16:55 +0100 [thread overview]
Message-ID: <1235848615.7043.30.camel@ubuntu.ubuntu-domain> (raw)
In-Reply-To: <7vmyc6foj3.fsf@gitster.siamese.dyndns.org>
Gnulib and glibc have gained a memmem() implementation using the Two-Way
algorithm, which needs constant space and linear time. Import it to
compat/ in order to replace the simple quadratic implementation there.
memmem.c and str-two-way.h are copied verbatim from the repository at
git://git.savannah.gnu.org/gnulib.git, with the following changes to
memmem.c to make it fit into git's build environment:
21,23c21
< #ifndef _LIBC
< # include <config.h>
< #endif
---
> #include "../git-compat-util.h"
40c38
< memmem (const void *haystack_start, size_t haystack_len,
---
> gitmemmem(const void *haystack_start, size_t haystack_len,
Signed-off-by: Rene Scharfe <rene.scharfe@lsrfire.ath.cx>
---
Makefile | 1 +
compat/memmem.c | 103 +++++++++----
compat/str-two-way.h | 429 ++++++++++++++++++++++++++++++++++++++++++++++++++
3 files changed, 504 insertions(+), 29 deletions(-)
rewrite compat/memmem.c (91%)
create mode 100644 compat/str-two-way.h
diff --git a/Makefile b/Makefile
index 0675c43..b2b15d9 100644
--- a/Makefile
+++ b/Makefile
@@ -359,6 +359,7 @@ LIB_H += cache-tree.h
LIB_H += commit.h
LIB_H += compat/cygwin.h
LIB_H += compat/mingw.h
+LIB_H += compat/str-two-way.h
LIB_H += csum-file.h
LIB_H += decorate.h
LIB_H += delta.h
diff --git a/compat/memmem.c b/compat/memmem.c
dissimilarity index 91%
index cd0d877..b0b7821 100644
--- a/compat/memmem.c
+++ b/compat/memmem.c
@@ -1,29 +1,74 @@
-#include "../git-compat-util.h"
-
-void *gitmemmem(const void *haystack, size_t haystack_len,
- const void *needle, size_t needle_len)
-{
- const char *begin = haystack;
- const char *last_possible = begin + haystack_len - needle_len;
-
- /*
- * The first occurrence of the empty string is deemed to occur at
- * the beginning of the string.
- */
- if (needle_len == 0)
- return (void *)begin;
-
- /*
- * Sanity check, otherwise the loop might search through the whole
- * memory.
- */
- if (haystack_len < needle_len)
- return NULL;
-
- for (; begin <= last_possible; begin++) {
- if (!memcmp(begin, needle, needle_len))
- return (void *)begin;
- }
-
- return NULL;
-}
+/* Copyright (C) 1991,92,93,94,96,97,98,2000,2004,2007,2008 Free Software
+ Foundation, Inc.
+ This file is part of the GNU C Library.
+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2, or (at your option)
+ any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation,
+ Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. */
+
+/* This particular implementation was written by Eric Blake, 2008. */
+
+#include "../git-compat-util.h"
+
+/* Specification of memmem. */
+#include <string.h>
+
+#ifndef _LIBC
+# define __builtin_expect(expr, val) (expr)
+#endif
+
+#define RETURN_TYPE void *
+#define AVAILABLE(h, h_l, j, n_l) ((j) <= (h_l) - (n_l))
+#include "str-two-way.h"
+
+/* Return the first occurrence of NEEDLE in HAYSTACK. Return HAYSTACK
+ if NEEDLE_LEN is 0, otherwise NULL if NEEDLE is not found in
+ HAYSTACK. */
+void *
+gitmemmem(const void *haystack_start, size_t haystack_len,
+ const void *needle_start, size_t needle_len)
+{
+ /* Abstract memory is considered to be an array of 'unsigned char' values,
+ not an array of 'char' values. See ISO C 99 section 6.2.6.1. */
+ const unsigned char *haystack = (const unsigned char *) haystack_start;
+ const unsigned char *needle = (const unsigned char *) needle_start;
+
+ if (needle_len == 0)
+ /* The first occurrence of the empty string is deemed to occur at
+ the beginning of the string. */
+ return (void *) haystack;
+
+ /* Sanity check, otherwise the loop might search through the whole
+ memory. */
+ if (__builtin_expect (haystack_len < needle_len, 0))
+ return NULL;
+
+ /* Use optimizations in memchr when possible, to reduce the search
+ size of haystack using a linear algorithm with a smaller
+ coefficient. However, avoid memchr for long needles, since we
+ can often achieve sublinear performance. */
+ if (needle_len < LONG_NEEDLE_THRESHOLD)
+ {
+ haystack = memchr (haystack, *needle, haystack_len);
+ if (!haystack || __builtin_expect (needle_len == 1, 0))
+ return (void *) haystack;
+ haystack_len -= haystack - (const unsigned char *) haystack_start;
+ if (haystack_len < needle_len)
+ return NULL;
+ return two_way_short_needle (haystack, haystack_len, needle, needle_len);
+ }
+ else
+ return two_way_long_needle (haystack, haystack_len, needle, needle_len);
+}
+
+#undef LONG_NEEDLE_THRESHOLD
diff --git a/compat/str-two-way.h b/compat/str-two-way.h
new file mode 100644
index 0000000..b0338a7
--- /dev/null
+++ b/compat/str-two-way.h
@@ -0,0 +1,429 @@
+/* Byte-wise substring search, using the Two-Way algorithm.
+ Copyright (C) 2008 Free Software Foundation, Inc.
+ This file is part of the GNU C Library.
+ Written by Eric Blake <ebb9@byu.net>, 2008.
+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2, or (at your option)
+ any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation,
+ Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. */
+
+/* Before including this file, you need to include <config.h> and
+ <string.h>, and define:
+ RESULT_TYPE A macro that expands to the return type.
+ AVAILABLE(h, h_l, j, n_l)
+ A macro that returns nonzero if there are
+ at least N_L bytes left starting at H[J].
+ H is 'unsigned char *', H_L, J, and N_L
+ are 'size_t'; H_L is an lvalue. For
+ NUL-terminated searches, H_L can be
+ modified each iteration to avoid having
+ to compute the end of H up front.
+
+ For case-insensitivity, you may optionally define:
+ CMP_FUNC(p1, p2, l) A macro that returns 0 iff the first L
+ characters of P1 and P2 are equal.
+ CANON_ELEMENT(c) A macro that canonicalizes an element right after
+ it has been fetched from one of the two strings.
+ The argument is an 'unsigned char'; the result
+ must be an 'unsigned char' as well.
+
+ This file undefines the macros documented above, and defines
+ LONG_NEEDLE_THRESHOLD.
+*/
+
+#include <limits.h>
+#include <stdint.h>
+
+/* We use the Two-Way string matching algorithm, which guarantees
+ linear complexity with constant space. Additionally, for long
+ needles, we also use a bad character shift table similar to the
+ Boyer-Moore algorithm to achieve improved (potentially sub-linear)
+ performance.
+
+ See http://www-igm.univ-mlv.fr/~lecroq/string/node26.html#SECTION00260
+ and http://en.wikipedia.org/wiki/Boyer-Moore_string_search_algorithm
+*/
+
+/* Point at which computing a bad-byte shift table is likely to be
+ worthwhile. Small needles should not compute a table, since it
+ adds (1 << CHAR_BIT) + NEEDLE_LEN computations of preparation for a
+ speedup no greater than a factor of NEEDLE_LEN. The larger the
+ needle, the better the potential performance gain. On the other
+ hand, on non-POSIX systems with CHAR_BIT larger than eight, the
+ memory required for the table is prohibitive. */
+#if CHAR_BIT < 10
+# define LONG_NEEDLE_THRESHOLD 32U
+#else
+# define LONG_NEEDLE_THRESHOLD SIZE_MAX
+#endif
+
+#ifndef MAX
+# define MAX(a, b) ((a < b) ? (b) : (a))
+#endif
+
+#ifndef CANON_ELEMENT
+# define CANON_ELEMENT(c) c
+#endif
+#ifndef CMP_FUNC
+# define CMP_FUNC memcmp
+#endif
+
+/* Perform a critical factorization of NEEDLE, of length NEEDLE_LEN.
+ Return the index of the first byte in the right half, and set
+ *PERIOD to the global period of the right half.
+
+ The global period of a string is the smallest index (possibly its
+ length) at which all remaining bytes in the string are repetitions
+ of the prefix (the last repetition may be a subset of the prefix).
+
+ When NEEDLE is factored into two halves, a local period is the
+ length of the smallest word that shares a suffix with the left half
+ and shares a prefix with the right half. All factorizations of a
+ non-empty NEEDLE have a local period of at least 1 and no greater
+ than NEEDLE_LEN.
+
+ A critical factorization has the property that the local period
+ equals the global period. All strings have at least one critical
+ factorization with the left half smaller than the global period.
+
+ Given an ordered alphabet, a critical factorization can be computed
+ in linear time, with 2 * NEEDLE_LEN comparisons, by computing the
+ larger of two ordered maximal suffixes. The ordered maximal
+ suffixes are determined by lexicographic comparison of
+ periodicity. */
+static size_t
+critical_factorization (const unsigned char *needle, size_t needle_len,
+ size_t *period)
+{
+ /* Index of last byte of left half, or SIZE_MAX. */
+ size_t max_suffix, max_suffix_rev;
+ size_t j; /* Index into NEEDLE for current candidate suffix. */
+ size_t k; /* Offset into current period. */
+ size_t p; /* Intermediate period. */
+ unsigned char a, b; /* Current comparison bytes. */
+
+ /* Invariants:
+ 0 <= j < NEEDLE_LEN - 1
+ -1 <= max_suffix{,_rev} < j (treating SIZE_MAX as if it were signed)
+ min(max_suffix, max_suffix_rev) < global period of NEEDLE
+ 1 <= p <= global period of NEEDLE
+ p == global period of the substring NEEDLE[max_suffix{,_rev}+1...j]
+ 1 <= k <= p
+ */
+
+ /* Perform lexicographic search. */
+ max_suffix = SIZE_MAX;
+ j = 0;
+ k = p = 1;
+ while (j + k < needle_len)
+ {
+ a = CANON_ELEMENT (needle[j + k]);
+ b = CANON_ELEMENT (needle[max_suffix + k]);
+ if (a < b)
+ {
+ /* Suffix is smaller, period is entire prefix so far. */
+ j += k;
+ k = 1;
+ p = j - max_suffix;
+ }
+ else if (a == b)
+ {
+ /* Advance through repetition of the current period. */
+ if (k != p)
+ ++k;
+ else
+ {
+ j += p;
+ k = 1;
+ }
+ }
+ else /* b < a */
+ {
+ /* Suffix is larger, start over from current location. */
+ max_suffix = j++;
+ k = p = 1;
+ }
+ }
+ *period = p;
+
+ /* Perform reverse lexicographic search. */
+ max_suffix_rev = SIZE_MAX;
+ j = 0;
+ k = p = 1;
+ while (j + k < needle_len)
+ {
+ a = CANON_ELEMENT (needle[j + k]);
+ b = CANON_ELEMENT (needle[max_suffix_rev + k]);
+ if (b < a)
+ {
+ /* Suffix is smaller, period is entire prefix so far. */
+ j += k;
+ k = 1;
+ p = j - max_suffix_rev;
+ }
+ else if (a == b)
+ {
+ /* Advance through repetition of the current period. */
+ if (k != p)
+ ++k;
+ else
+ {
+ j += p;
+ k = 1;
+ }
+ }
+ else /* a < b */
+ {
+ /* Suffix is larger, start over from current location. */
+ max_suffix_rev = j++;
+ k = p = 1;
+ }
+ }
+
+ /* Choose the longer suffix. Return the first byte of the right
+ half, rather than the last byte of the left half. */
+ if (max_suffix_rev + 1 < max_suffix + 1)
+ return max_suffix + 1;
+ *period = p;
+ return max_suffix_rev + 1;
+}
+
+/* Return the first location of non-empty NEEDLE within HAYSTACK, or
+ NULL. HAYSTACK_LEN is the minimum known length of HAYSTACK. This
+ method is optimized for NEEDLE_LEN < LONG_NEEDLE_THRESHOLD.
+ Performance is guaranteed to be linear, with an initialization cost
+ of 2 * NEEDLE_LEN comparisons.
+
+ If AVAILABLE does not modify HAYSTACK_LEN (as in memmem), then at
+ most 2 * HAYSTACK_LEN - NEEDLE_LEN comparisons occur in searching.
+ If AVAILABLE modifies HAYSTACK_LEN (as in strstr), then at most 3 *
+ HAYSTACK_LEN - NEEDLE_LEN comparisons occur in searching. */
+static RETURN_TYPE
+two_way_short_needle (const unsigned char *haystack, size_t haystack_len,
+ const unsigned char *needle, size_t needle_len)
+{
+ size_t i; /* Index into current byte of NEEDLE. */
+ size_t j; /* Index into current window of HAYSTACK. */
+ size_t period; /* The period of the right half of needle. */
+ size_t suffix; /* The index of the right half of needle. */
+
+ /* Factor the needle into two halves, such that the left half is
+ smaller than the global period, and the right half is
+ periodic (with a period as large as NEEDLE_LEN - suffix). */
+ suffix = critical_factorization (needle, needle_len, &period);
+
+ /* Perform the search. Each iteration compares the right half
+ first. */
+ if (CMP_FUNC (needle, needle + period, suffix) == 0)
+ {
+ /* Entire needle is periodic; a mismatch can only advance by the
+ period, so use memory to avoid rescanning known occurrences
+ of the period. */
+ size_t memory = 0;
+ j = 0;
+ while (AVAILABLE (haystack, haystack_len, j, needle_len))
+ {
+ /* Scan for matches in right half. */
+ i = MAX (suffix, memory);
+ while (i < needle_len && (CANON_ELEMENT (needle[i])
+ == CANON_ELEMENT (haystack[i + j])))
+ ++i;
+ if (needle_len <= i)
+ {
+ /* Scan for matches in left half. */
+ i = suffix - 1;
+ while (memory < i + 1 && (CANON_ELEMENT (needle[i])
+ == CANON_ELEMENT (haystack[i + j])))
+ --i;
+ if (i + 1 < memory + 1)
+ return (RETURN_TYPE) (haystack + j);
+ /* No match, so remember how many repetitions of period
+ on the right half were scanned. */
+ j += period;
+ memory = needle_len - period;
+ }
+ else
+ {
+ j += i - suffix + 1;
+ memory = 0;
+ }
+ }
+ }
+ else
+ {
+ /* The two halves of needle are distinct; no extra memory is
+ required, and any mismatch results in a maximal shift. */
+ period = MAX (suffix, needle_len - suffix) + 1;
+ j = 0;
+ while (AVAILABLE (haystack, haystack_len, j, needle_len))
+ {
+ /* Scan for matches in right half. */
+ i = suffix;
+ while (i < needle_len && (CANON_ELEMENT (needle[i])
+ == CANON_ELEMENT (haystack[i + j])))
+ ++i;
+ if (needle_len <= i)
+ {
+ /* Scan for matches in left half. */
+ i = suffix - 1;
+ while (i != SIZE_MAX && (CANON_ELEMENT (needle[i])
+ == CANON_ELEMENT (haystack[i + j])))
+ --i;
+ if (i == SIZE_MAX)
+ return (RETURN_TYPE) (haystack + j);
+ j += period;
+ }
+ else
+ j += i - suffix + 1;
+ }
+ }
+ return NULL;
+}
+
+/* Return the first location of non-empty NEEDLE within HAYSTACK, or
+ NULL. HAYSTACK_LEN is the minimum known length of HAYSTACK. This
+ method is optimized for LONG_NEEDLE_THRESHOLD <= NEEDLE_LEN.
+ Performance is guaranteed to be linear, with an initialization cost
+ of 3 * NEEDLE_LEN + (1 << CHAR_BIT) operations.
+
+ If AVAILABLE does not modify HAYSTACK_LEN (as in memmem), then at
+ most 2 * HAYSTACK_LEN - NEEDLE_LEN comparisons occur in searching,
+ and sublinear performance O(HAYSTACK_LEN / NEEDLE_LEN) is possible.
+ If AVAILABLE modifies HAYSTACK_LEN (as in strstr), then at most 3 *
+ HAYSTACK_LEN - NEEDLE_LEN comparisons occur in searching, and
+ sublinear performance is not possible. */
+static RETURN_TYPE
+two_way_long_needle (const unsigned char *haystack, size_t haystack_len,
+ const unsigned char *needle, size_t needle_len)
+{
+ size_t i; /* Index into current byte of NEEDLE. */
+ size_t j; /* Index into current window of HAYSTACK. */
+ size_t period; /* The period of the right half of needle. */
+ size_t suffix; /* The index of the right half of needle. */
+ size_t shift_table[1U << CHAR_BIT]; /* See below. */
+
+ /* Factor the needle into two halves, such that the left half is
+ smaller than the global period, and the right half is
+ periodic (with a period as large as NEEDLE_LEN - suffix). */
+ suffix = critical_factorization (needle, needle_len, &period);
+
+ /* Populate shift_table. For each possible byte value c,
+ shift_table[c] is the distance from the last occurrence of c to
+ the end of NEEDLE, or NEEDLE_LEN if c is absent from the NEEDLE.
+ shift_table[NEEDLE[NEEDLE_LEN - 1]] contains the only 0. */
+ for (i = 0; i < 1U << CHAR_BIT; i++)
+ shift_table[i] = needle_len;
+ for (i = 0; i < needle_len; i++)
+ shift_table[CANON_ELEMENT (needle[i])] = needle_len - i - 1;
+
+ /* Perform the search. Each iteration compares the right half
+ first. */
+ if (CMP_FUNC (needle, needle + period, suffix) == 0)
+ {
+ /* Entire needle is periodic; a mismatch can only advance by the
+ period, so use memory to avoid rescanning known occurrences
+ of the period. */
+ size_t memory = 0;
+ size_t shift;
+ j = 0;
+ while (AVAILABLE (haystack, haystack_len, j, needle_len))
+ {
+ /* Check the last byte first; if it does not match, then
+ shift to the next possible match location. */
+ shift = shift_table[CANON_ELEMENT (haystack[j + needle_len - 1])];
+ if (0 < shift)
+ {
+ if (memory && shift < period)
+ {
+ /* Since needle is periodic, but the last period has
+ a byte out of place, there can be no match until
+ after the mismatch. */
+ shift = needle_len - period;
+ memory = 0;
+ }
+ j += shift;
+ continue;
+ }
+ /* Scan for matches in right half. The last byte has
+ already been matched, by virtue of the shift table. */
+ i = MAX (suffix, memory);
+ while (i < needle_len - 1 && (CANON_ELEMENT (needle[i])
+ == CANON_ELEMENT (haystack[i + j])))
+ ++i;
+ if (needle_len - 1 <= i)
+ {
+ /* Scan for matches in left half. */
+ i = suffix - 1;
+ while (memory < i + 1 && (CANON_ELEMENT (needle[i])
+ == CANON_ELEMENT (haystack[i + j])))
+ --i;
+ if (i + 1 < memory + 1)
+ return (RETURN_TYPE) (haystack + j);
+ /* No match, so remember how many repetitions of period
+ on the right half were scanned. */
+ j += period;
+ memory = needle_len - period;
+ }
+ else
+ {
+ j += i - suffix + 1;
+ memory = 0;
+ }
+ }
+ }
+ else
+ {
+ /* The two halves of needle are distinct; no extra memory is
+ required, and any mismatch results in a maximal shift. */
+ size_t shift;
+ period = MAX (suffix, needle_len - suffix) + 1;
+ j = 0;
+ while (AVAILABLE (haystack, haystack_len, j, needle_len))
+ {
+ /* Check the last byte first; if it does not match, then
+ shift to the next possible match location. */
+ shift = shift_table[CANON_ELEMENT (haystack[j + needle_len - 1])];
+ if (0 < shift)
+ {
+ j += shift;
+ continue;
+ }
+ /* Scan for matches in right half. The last byte has
+ already been matched, by virtue of the shift table. */
+ i = suffix;
+ while (i < needle_len - 1 && (CANON_ELEMENT (needle[i])
+ == CANON_ELEMENT (haystack[i + j])))
+ ++i;
+ if (needle_len - 1 <= i)
+ {
+ /* Scan for matches in left half. */
+ i = suffix - 1;
+ while (i != SIZE_MAX && (CANON_ELEMENT (needle[i])
+ == CANON_ELEMENT (haystack[i + j])))
+ --i;
+ if (i == SIZE_MAX)
+ return (RETURN_TYPE) (haystack + j);
+ j += period;
+ }
+ else
+ j += i - suffix + 1;
+ }
+ }
+ return NULL;
+}
+
+#undef AVAILABLE
+#undef CANON_ELEMENT
+#undef CMP_FUNC
+#undef MAX
+#undef RETURN_TYPE
--
1.6.2.rc2
next prev parent reply other threads:[~2009-02-28 19:20 UTC|newest]
Thread overview: 23+ messages / expand[flat|nested] mbox.gz Atom feed top
2009-02-26 6:52 [PATCH 0/4] Pickaxe search clean-up and optimization Junio C Hamano
2009-02-26 6:52 ` [PATCH 1/4] diffcore-pickaxe: refactor diffcore_pickaxe() Junio C Hamano
2009-02-27 23:58 ` René Scharfe
2009-02-26 6:52 ` [PATCH 2/4] diffcore-pickaxe: micro-optimize has_match() function Junio C Hamano
2009-02-26 6:52 ` [PATCH 3/4] diffcore-pickaxe: further refactor count_match() Junio C Hamano
2009-02-26 7:23 ` Kjetil Barvik
2009-02-28 1:13 ` René Scharfe
2009-02-28 1:25 ` Junio C Hamano
2009-02-28 6:08 ` Junio C Hamano
2009-02-28 13:10 ` René Scharfe
2009-02-28 17:40 ` Junio C Hamano
2009-02-28 18:15 ` René Scharfe
2009-02-28 19:16 ` René Scharfe [this message]
2009-02-28 22:44 ` [PATCH] import memmem() with linear complexity from Gnulib Mike Hommey
2009-03-01 3:41 ` Jeff King
2009-03-01 11:15 ` René Scharfe
2009-03-01 18:55 ` René Scharfe
2009-03-01 7:31 ` [PATCH 3/4] diffcore-pickaxe: further refactor count_match() Junio C Hamano
2009-03-01 10:53 ` René Scharfe
2009-02-26 6:52 ` [PATCH 4/4] diffcore-pickaxe: optimize by trimming common initial and trailing parts Junio C Hamano
2009-02-26 9:05 ` Junio C Hamano
2009-03-02 23:00 ` [PATCH 1/2] diffcore-pickaxe: use memmem() René Scharfe
2009-03-02 23:19 ` [PATCH 2/2] optimize compat/ memmem() René Scharfe
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