I use the attached patch here and its helped me quite a bit. Thought I'd send it out for others to use as well. Prior to 0.12 I could do this in my own scripts after a cg-merge exited with conflicts. Resently it seems 'git-ls-files --unmerged' will no longer list any files that had conflicts during the merge. So, this patch modifies cg-Xmergefile to interactively prompt you with what to do in the event of a merge conflict. It is set up to work reasonably well with kdiff3 as is. If it or a variant gets sucked into cogito -- great. If there is already a way to kick off a merge conflict resolution program while cg-merge is running, please let me know. Thanks, James