From mboxrd@z Thu Jan  1 00:00:00 1970
From: Junio C Hamano <gitster@pobox.com>
Subject: Re: consistency problem on ZFS
Date: Sun, 28 Apr 2013 14:33:28 -0700
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To: Yann Hodique <yann.hodique@gmail.com>
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In-Reply-To: <m2bo8yxyg2.fsf@jarvis.hodique.info> (Yann Hodique's message of
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Yann Hodique <yann.hodique@gmail.com> writes:

> $ git checkout next; git diff-files; git checkout next; git diff-files
> Already on 'next'
> :100644 100644 bd774cccaa14e061c3c26996567ee28f4f77ec80 0000000000000000000000000000000000000000 M	magit.el
> Already on 'next'
> $

If you run "git update-index --refresh" between the first "checkout"
and "diff-files", do you still see the issue?