Issues Building Numpy

* Issues Building Numpy
@ 2013-10-23 19:22 Stephen Harrison
  2013-10-23 23:24 ` Philip Balister
  0 siblings, 1 reply; 7+ messages in thread
From: Stephen Harrison @ 2013-10-23 19:22 UTC (permalink / raw)
  To: openembedded-devel

[-- Attachment #1: Type: text/plain, Size: 387 bytes --]

Hi,

I am trying to build an image for the Zedboard (ARM) platform. I can't seem
to build the Numpy package and I can't quite understand why.

I've attached the compile log. I've noticed there are many complaints about
ATLAS, BLAS etc not being available and other errors about executables
being in the wrong format.

Any help would be much appreciated.

Regards,

Stephen

[-- Attachment #2: do_compile.log --]
[-- Type: application/octet-stream, Size: 48167 bytes --]

DEBUG: Executing shell function do_compile
Running from numpy source directory.
non-existing path in 'numpy/distutils': 'site.cfg'
F2PY Version 2
blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in ['/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/i386-linux-gnu']
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in ['/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/lib', '/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib/sse2', '/usr/lib', '/usr/lib/i386-linux-gnu/sse2', '/usr/lib/i386-linux-gnu']
  NOT AVAILABLE

atlas_blas_info:
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
Could not locate executable arm-oe-linux-gnueabi-g77  -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7
Could not locate executable arm-oe-linux-gnueabi-gcc  -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -shared
Could not locate executable arm-oe-linux-gnueabi-ld --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7
Found executable /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/bin/armv7a-vfp-neon-oe-linux-gnueabi/arm-oe-linux-gnueabi-ar
Found executable /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/bin/armv7a-vfp-neon-oe-linux-gnueabi/arm-oe-linux-gnueabi-ranlib
customize Gnu95FCompiler
customize Gnu95FCompiler using config
compiling '_configtest.c':

/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
  ATL_buildinfo();
  return 0;
}

C compiler: arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -O2 -pipe -g -feliminate-unused-debug-types -fPIC

compile options: '-c'
arm-oe-linux-gnueabi-gcc: _configtest.c
  FOUND:
    libraries = ['f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib/atlas-base']
    language = c
    define_macros = [('NO_ATLAS_INFO', -1)]
    include_dirs = ['/usr/include/atlas']

  FOUND:
    libraries = ['f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib/atlas-base']
    language = c
    define_macros = [('NO_ATLAS_INFO', -1)]
    include_dirs = ['/usr/include/atlas']

lapack_opt_info:
lapack_mkl_info:
mkl_info:
  libraries mkl,vml,guide not found in ['/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/i386-linux-gnu']
  NOT AVAILABLE

  NOT AVAILABLE

atlas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/lib
  libraries lapack_atlas not found in /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
  libraries lapack_atlas not found in /usr/local/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib/atlas-base
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib/sse2
  libraries lapack_atlas not found in /usr/lib/sse2
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib/i386-linux-gnu/sse2
  libraries lapack_atlas not found in /usr/lib/i386-linux-gnu/sse2
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib/i386-linux-gnu
  libraries lapack_atlas not found in /usr/lib/i386-linux-gnu
numpy.distutils.system_info.atlas_threads_info
  NOT AVAILABLE

atlas_info:
  libraries f77blas,cblas,atlas not found in /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/lib
  libraries lapack_atlas not found in /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/lib
  libraries f77blas,cblas,atlas not found in /usr/local/lib
  libraries lapack_atlas not found in /usr/local/lib
numpy.distutils.system_info.atlas_info
customize Gnu95FCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler using config
compiling '_configtest.c':

/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
  ATL_buildinfo();
  return 0;
}

C compiler: arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -O2 -pipe -g -feliminate-unused-debug-types -fPIC

compile options: '-c'
arm-oe-linux-gnueabi-gcc: _configtest.c
  FOUND:
    libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib/atlas-base/atlas', '/usr/lib/atlas-base']
    language = f77
    define_macros = [('NO_ATLAS_INFO', -1)]
    include_dirs = ['/usr/include/atlas']

  FOUND:
    libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib/atlas-base/atlas', '/usr/lib/atlas-base']
    language = f77
    define_macros = [('NO_ATLAS_INFO', -1)]
    include_dirs = ['/usr/include/atlas']

running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
building library "npymath" sources
customize Gnu95FCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler using config
C compiler: arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -O2 -pipe -g -feliminate-unused-debug-types -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7 -c'
arm-oe-linux-gnueabi-gcc: _configtest.c
arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 _configtest.o -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -O2 -pipe -g -feliminate-unused-debug-types -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7 -c'
arm-oe-linux-gnueabi-gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function 'exp' [enabled by default]
 int exp (void);
     ^
arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 _configtest.o -o _configtest
_configtest.o: In function `main':
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/work/armv7a-vfp-neon-oe-linux-gnueabi/python-numpy/1.7.0-r0/numpy-1.7.0/_configtest.c:6: undefined reference to `exp'
collect2: error: ld returned 1 exit status
_configtest.o: In function `main':
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/work/armv7a-vfp-neon-oe-linux-gnueabi/python-numpy/1.7.0-r0/numpy-1.7.0/_configtest.c:6: undefined reference to `exp'
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
C compiler: arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -O2 -pipe -g -feliminate-unused-debug-types -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7 -c'
arm-oe-linux-gnueabi-gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function 'exp' [enabled by default]
 int exp (void);
     ^
arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building library "npysort" sources
building extension "numpy.core._dummy" sources
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-i686-2.7/numpy/core/include/numpy/config.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.multiarray" sources
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-i686-2.7/numpy/core/include/numpy/config.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.umath" sources
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/__ufunc_api.h' to sources.
  adding 'build/src.linux-i686-2.7/numpy/core/src/umath' to include_dirs.
numpy.core - nothing done with h_files = ['build/src.linux-i686-2.7/numpy/core/src/umath/funcs.inc', 'build/src.linux-i686-2.7/numpy/core/include/numpy/config.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core.scalarmath" sources
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/__multiarray_api.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/__ufunc_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-i686-2.7/numpy/core/include/numpy/config.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/__multiarray_api.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core._dotblas" sources
  adding 'numpy/core/blasdot/_dotblas.c' to sources.
building extension "numpy.core.umath_tests" sources
building extension "numpy.core.multiarray_tests" sources
building extension "numpy.lib._compiled_base" sources
building extension "numpy.numarray._capi" sources
building extension "numpy.fft.fftpack_lite" sources
building extension "numpy.linalg.lapack_lite" sources
  adding 'numpy/linalg/lapack_litemodule.c' to sources.
  adding 'numpy/linalg/python_xerbla.c' to sources.
building extension "numpy.random.mtrand" sources
C compiler: arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -O2 -pipe -g -feliminate-unused-debug-types -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7 -c'
arm-oe-linux-gnueabi-gcc: _configtest.c
arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 _configtest.o -o _configtest
_configtest
unable to execute _configtest: Exec format error
failure.
removing: _configtest.c _configtest.o _configtest
building data_files sources
build_src: building npy-pkg config files
running build_py
copying numpy/version.py -> build/lib.linux-i686-2.7/numpy
copying build/src.linux-i686-2.7/numpy/__config__.py -> build/lib.linux-i686-2.7/numpy
copying build/src.linux-i686-2.7/numpy/distutils/__config__.py -> build/lib.linux-i686-2.7/numpy/distutils
running build_clib
customize UnixCCompiler
customize UnixCCompiler using build_clib
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize Gnu95FCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler using build_ext
building 'numpy.core._dotblas' extension
compiling C sources
C compiler: arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -O2 -pipe -g -feliminate-unused-debug-types -fPIC

compile options: '-DNO_ATLAS_INFO=-1 -Inumpy/core/blasdot -I/usr/include/atlas -Inumpy/core/include -Ibuild/src.linux-i686-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7 -Ibuild/src.linux-i686-2.7/numpy/core/src/multiarray -Ibuild/src.linux-i686-2.7/numpy/core/src/umath -c'
arm-oe-linux-gnueabi-gcc: numpy/core/blasdot/_dotblas.c
cc1: warning: include location "/usr/include/atlas" is unsafe for cross-compilation [-Wpoison-system-directories]
In file included from numpy/core/src/private/npy_config.h:4:0,
                 from numpy/core/blasdot/_dotblas.c:8:
build/src.linux-i686-2.7/numpy/core/include/numpy/config.h:7:0: warning: "SIZEOF_LONG_DOUBLE" redefined [enabled by default]
 #define SIZEOF_LONG_DOUBLE 12
 ^
In file included from /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7/Python.h:8:0,
                 from numpy/core/blasdot/_dotblas.c:7:
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7/pyconfig.h:995:0: note: this is the location of the previous definition
 #define SIZEOF_LONG_DOUBLE 8
 ^
In file included from numpy/core/src/private/npy_config.h:4:0,
                 from numpy/core/blasdot/_dotblas.c:8:
build/src.linux-i686-2.7/numpy/core/include/numpy/config.h:14:0: warning: "HAVE_LOG1P" redefined [enabled by default]
 #define HAVE_LOG1P
 ^
In file included from /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7/Python.h:8:0,
                 from numpy/core/blasdot/_dotblas.c:7:
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7/pyconfig.h:441:0: note: this is the location of the previous definition
 #define HAVE_LOG1P 1
 ^
In file included from numpy/core/src/private/npy_config.h:4:0,
                 from numpy/core/blasdot/_dotblas.c:8:
build/src.linux-i686-2.7/numpy/core/include/numpy/config.h:15:0: warning: "HAVE_EXPM1" redefined [enabled by default]
 #define HAVE_EXPM1
 ^
In file included from /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7/Python.h:8:0,
                 from numpy/core/blasdot/_dotblas.c:7:
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7/pyconfig.h:206:0: note: this is the location of the previous definition
 #define HAVE_EXPM1 1
 ^
arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -shared -Wl,-O1 -Wl,--hash-style=gnu -Wl,--as-needed -O2 -pipe -g -feliminate-unused-debug-types build/temp.linux-i686-2.7/numpy/core/blasdot/_dotblas.o -L/usr/lib/atlas-base -L/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/lib -Lbuild/temp.linux-i686-2.7 -lf77blas -lcblas -latlas -lpython2.7 -o build/lib.linux-i686-2.7/numpy/core/_dotblas.so
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: warning: library search path "/usr/lib/atlas-base" is unsafe for cross-compilation
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libf77blas.so when searching for -lf77blas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libf77blas.a when searching for -lf77blas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: cannot find -lf77blas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libcblas.so when searching for -lcblas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libcblas.a when searching for -lcblas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: cannot find -lcblas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libatlas.so when searching for -latlas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libatlas.a when searching for -latlas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: cannot find -latlas
collect2: error: ld returned 1 exit status
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: warning: library search path "/usr/lib/atlas-base" is unsafe for cross-compilation
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libf77blas.so when searching for -lf77blas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libf77blas.a when searching for -lf77blas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: cannot find -lf77blas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libcblas.so when searching for -lcblas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libcblas.a when searching for -lcblas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: cannot find -lcblas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libatlas.so when searching for -latlas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libatlas.a when searching for -latlas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: cannot find -latlas
collect2: error: ld returned 1 exit status
error: Command "arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -shared -Wl,-O1 -Wl,--hash-style=gnu -Wl,--as-needed -O2 -pipe -g -feliminate-unused-debug-types build/temp.linux-i686-2.7/numpy/core/blasdot/_dotblas.o -L/usr/lib/atlas-base -L/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/lib -Lbuild/temp.linux-i686-2.7 -lf77blas -lcblas -latlas -lpython2.7 -o build/lib.linux-i686-2.7/numpy/core/_dotblas.so" failed with exit status 1
Running from numpy source directory.
non-existing path in 'numpy/distutils': 'site.cfg'
F2PY Version 2
blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in ['/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/i386-linux-gnu']
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in ['/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/lib', '/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib/sse2', '/usr/lib', '/usr/lib/i386-linux-gnu/sse2', '/usr/lib/i386-linux-gnu']
  NOT AVAILABLE

atlas_blas_info:
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
Could not locate executable arm-oe-linux-gnueabi-g77  -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7
Could not locate executable arm-oe-linux-gnueabi-gcc  -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -shared
Could not locate executable arm-oe-linux-gnueabi-ld --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7
Found executable /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/bin/armv7a-vfp-neon-oe-linux-gnueabi/arm-oe-linux-gnueabi-ar
Found executable /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/bin/armv7a-vfp-neon-oe-linux-gnueabi/arm-oe-linux-gnueabi-ranlib
customize Gnu95FCompiler
customize Gnu95FCompiler using config
compiling '_configtest.c':

/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
  ATL_buildinfo();
  return 0;
}

C compiler: arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -O2 -pipe -g -feliminate-unused-debug-types -fPIC

compile options: '-c'
arm-oe-linux-gnueabi-gcc: _configtest.c
  FOUND:
    libraries = ['f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib/atlas-base']
    language = c
    define_macros = [('NO_ATLAS_INFO', -1)]
    include_dirs = ['/usr/include/atlas']

  FOUND:
    libraries = ['f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib/atlas-base']
    language = c
    define_macros = [('NO_ATLAS_INFO', -1)]
    include_dirs = ['/usr/include/atlas']

lapack_opt_info:
lapack_mkl_info:
mkl_info:
  libraries mkl,vml,guide not found in ['/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/i386-linux-gnu']
  NOT AVAILABLE

  NOT AVAILABLE

atlas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/lib
  libraries lapack_atlas not found in /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
  libraries lapack_atlas not found in /usr/local/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib/atlas-base
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib/sse2
  libraries lapack_atlas not found in /usr/lib/sse2
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib/i386-linux-gnu/sse2
  libraries lapack_atlas not found in /usr/lib/i386-linux-gnu/sse2
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib/i386-linux-gnu
  libraries lapack_atlas not found in /usr/lib/i386-linux-gnu
numpy.distutils.system_info.atlas_threads_info
  NOT AVAILABLE

atlas_info:
  libraries f77blas,cblas,atlas not found in /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/lib
  libraries lapack_atlas not found in /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/lib
  libraries f77blas,cblas,atlas not found in /usr/local/lib
  libraries lapack_atlas not found in /usr/local/lib
numpy.distutils.system_info.atlas_info
customize Gnu95FCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler using config
compiling '_configtest.c':

/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
  ATL_buildinfo();
  return 0;
}

C compiler: arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -O2 -pipe -g -feliminate-unused-debug-types -fPIC

compile options: '-c'
arm-oe-linux-gnueabi-gcc: _configtest.c
  FOUND:
    libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib/atlas-base/atlas', '/usr/lib/atlas-base']
    language = f77
    define_macros = [('NO_ATLAS_INFO', -1)]
    include_dirs = ['/usr/include/atlas']

  FOUND:
    libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib/atlas-base/atlas', '/usr/lib/atlas-base']
    language = f77
    define_macros = [('NO_ATLAS_INFO', -1)]
    include_dirs = ['/usr/include/atlas']

running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
building library "npymath" sources
customize Gnu95FCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler using config
C compiler: arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -O2 -pipe -g -feliminate-unused-debug-types -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7 -c'
arm-oe-linux-gnueabi-gcc: _configtest.c
arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 _configtest.o -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -O2 -pipe -g -feliminate-unused-debug-types -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7 -c'
arm-oe-linux-gnueabi-gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function 'exp' [enabled by default]
 int exp (void);
     ^
arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 _configtest.o -o _configtest
_configtest.o: In function `main':
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/work/armv7a-vfp-neon-oe-linux-gnueabi/python-numpy/1.7.0-r0/numpy-1.7.0/_configtest.c:6: undefined reference to `exp'
collect2: error: ld returned 1 exit status
_configtest.o: In function `main':
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/work/armv7a-vfp-neon-oe-linux-gnueabi/python-numpy/1.7.0-r0/numpy-1.7.0/_configtest.c:6: undefined reference to `exp'
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
C compiler: arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -O2 -pipe -g -feliminate-unused-debug-types -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7 -c'
arm-oe-linux-gnueabi-gcc: _configtest.c
_configtest.c:1:5: warning: conflicting types for built-in function 'exp' [enabled by default]
 int exp (void);
     ^
arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building library "npysort" sources
building extension "numpy.core._dummy" sources
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-i686-2.7/numpy/core/include/numpy/config.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.multiarray" sources
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-i686-2.7/numpy/core/include/numpy/config.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.umath" sources
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/__ufunc_api.h' to sources.
  adding 'build/src.linux-i686-2.7/numpy/core/src/umath' to include_dirs.
numpy.core - nothing done with h_files = ['build/src.linux-i686-2.7/numpy/core/src/umath/funcs.inc', 'build/src.linux-i686-2.7/numpy/core/include/numpy/config.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core.scalarmath" sources
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/__multiarray_api.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
  adding 'build/src.linux-i686-2.7/numpy/core/include/numpy/__ufunc_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-i686-2.7/numpy/core/include/numpy/config.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/_numpyconfig.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/__multiarray_api.h', 'build/src.linux-i686-2.7/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core._dotblas" sources
  adding 'numpy/core/blasdot/_dotblas.c' to sources.
building extension "numpy.core.umath_tests" sources
building extension "numpy.core.multiarray_tests" sources
building extension "numpy.lib._compiled_base" sources
building extension "numpy.numarray._capi" sources
building extension "numpy.fft.fftpack_lite" sources
building extension "numpy.linalg.lapack_lite" sources
  adding 'numpy/linalg/lapack_litemodule.c' to sources.
  adding 'numpy/linalg/python_xerbla.c' to sources.
building extension "numpy.random.mtrand" sources
C compiler: arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -O2 -pipe -g -feliminate-unused-debug-types -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7 -c'
arm-oe-linux-gnueabi-gcc: _configtest.c
arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 _configtest.o -o _configtest
_configtest
unable to execute _configtest: Exec format error
failure.
removing: _configtest.c _configtest.o _configtest
building data_files sources
build_src: building npy-pkg config files
running build_py
copying numpy/version.py -> build/lib.linux-i686-2.7/numpy
copying build/src.linux-i686-2.7/numpy/__config__.py -> build/lib.linux-i686-2.7/numpy
copying build/src.linux-i686-2.7/numpy/distutils/__config__.py -> build/lib.linux-i686-2.7/numpy/distutils
running build_clib
customize UnixCCompiler
customize UnixCCompiler using build_clib
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize Gnu95FCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler using build_ext
building 'numpy.core._dotblas' extension
compiling C sources
C compiler: arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -O2 -pipe -g -feliminate-unused-debug-types -fPIC

compile options: '-DNO_ATLAS_INFO=-1 -Inumpy/core/blasdot -I/usr/include/atlas -Inumpy/core/include -Ibuild/src.linux-i686-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7 -Ibuild/src.linux-i686-2.7/numpy/core/src/multiarray -Ibuild/src.linux-i686-2.7/numpy/core/src/umath -c'
arm-oe-linux-gnueabi-gcc: numpy/core/blasdot/_dotblas.c
cc1: warning: include location "/usr/include/atlas" is unsafe for cross-compilation [-Wpoison-system-directories]
In file included from numpy/core/src/private/npy_config.h:4:0,
                 from numpy/core/blasdot/_dotblas.c:8:
build/src.linux-i686-2.7/numpy/core/include/numpy/config.h:7:0: warning: "SIZEOF_LONG_DOUBLE" redefined [enabled by default]
 #define SIZEOF_LONG_DOUBLE 12
 ^
In file included from /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7/Python.h:8:0,
                 from numpy/core/blasdot/_dotblas.c:7:
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7/pyconfig.h:995:0: note: this is the location of the previous definition
 #define SIZEOF_LONG_DOUBLE 8
 ^
In file included from numpy/core/src/private/npy_config.h:4:0,
                 from numpy/core/blasdot/_dotblas.c:8:
build/src.linux-i686-2.7/numpy/core/include/numpy/config.h:14:0: warning: "HAVE_LOG1P" redefined [enabled by default]
 #define HAVE_LOG1P
 ^
In file included from /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7/Python.h:8:0,
                 from numpy/core/blasdot/_dotblas.c:7:
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7/pyconfig.h:441:0: note: this is the location of the previous definition
 #define HAVE_LOG1P 1
 ^
In file included from numpy/core/src/private/npy_config.h:4:0,
                 from numpy/core/blasdot/_dotblas.c:8:
build/src.linux-i686-2.7/numpy/core/include/numpy/config.h:15:0: warning: "HAVE_EXPM1" redefined [enabled by default]
 #define HAVE_EXPM1
 ^
In file included from /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7/Python.h:8:0,
                 from numpy/core/blasdot/_dotblas.c:7:
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/include/python2.7/pyconfig.h:206:0: note: this is the location of the previous definition
 #define HAVE_EXPM1 1
 ^
arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -shared -Wl,-O1 -Wl,--hash-style=gnu -Wl,--as-needed -O2 -pipe -g -feliminate-unused-debug-types build/temp.linux-i686-2.7/numpy/core/blasdot/_dotblas.o -L/usr/lib/atlas-base -L/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/lib -Lbuild/temp.linux-i686-2.7 -lf77blas -lcblas -latlas -lpython2.7 -o build/lib.linux-i686-2.7/numpy/core/_dotblas.so
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: warning: library search path "/usr/lib/atlas-base" is unsafe for cross-compilation
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libf77blas.so when searching for -lf77blas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libf77blas.a when searching for -lf77blas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: cannot find -lf77blas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libcblas.so when searching for -lcblas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libcblas.a when searching for -lcblas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: cannot find -lcblas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libatlas.so when searching for -latlas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libatlas.a when searching for -latlas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: cannot find -latlas
collect2: error: ld returned 1 exit status
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: warning: library search path "/usr/lib/atlas-base" is unsafe for cross-compilation
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libf77blas.so when searching for -lf77blas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libf77blas.a when searching for -lf77blas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: cannot find -lf77blas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libcblas.so when searching for -lcblas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libcblas.a when searching for -lcblas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: cannot find -lcblas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libatlas.so when searching for -latlas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: skipping incompatible /usr/lib/atlas-base/libatlas.a when searching for -latlas
/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/i686-linux/usr/libexec/armv7a-vfp-neon-oe-linux-gnueabi/gcc/arm-oe-linux-gnueabi/4.8.1/ld: cannot find -latlas
collect2: error: ld returned 1 exit status
error: Command "arm-oe-linux-gnueabi-gcc -march=armv7-a -mthumb-interwork -mfloat-abi=softfp -mfpu=neon --sysroot=/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7 -shared -Wl,-O1 -Wl,--hash-style=gnu -Wl,--as-needed -O2 -pipe -g -feliminate-unused-debug-types build/temp.linux-i686-2.7/numpy/core/blasdot/_dotblas.o -L/usr/lib/atlas-base -L/home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/sysroots/zedboard-user-peripheral-zynq7/usr/lib -Lbuild/temp.linux-i686-2.7 -lf77blas -lcblas -latlas -lpython2.7 -o build/lib.linux-i686-2.7/numpy/core/_dotblas.so" failed with exit status 1
ERROR: python setup.py build_ext execution failed.
ERROR: Function failed: do_compile (log file is located at /home/msteve/Workspace/openembedded-core/build_zedboard/tmp-eglibc/work/armv7a-vfp-neon-oe-linux-gnueabi/python-numpy/1.7.0-r0/temp/log.do_compile.31308)

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